STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1354PFAM: protein of unknown function DUF214; KEGG: lpc:LPC_2445 ABC transporter, permease protein. (414 aa)    
Predicted Functional Partners:
Tola_1353
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2766 peptide ABC transporter.
 
 0.991
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 0.946
Tola_2240
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: aha:AHA_2005 lipoprotein-releasing system transmembrane protein LolC.
  
  
 
0.925
Tola_2238
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: asa:ASA_1885 lipoprotein releasing system transmembrane protein LolE.
  
  
 
0.924
Tola_1355
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: lpf:lpl0882 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.876
macB
ABC transporter related; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
0.820
Tola_1350
PFAM: Mammalian cell entry related domain protein; KEGG: psa:PST_0089 ABC transporter permease.
  
  
 0.742
Tola_1348
PFAM: protein of unknown function UPF0118; KEGG: tmz:Tmz1t_0268 protein of unknown function UPF0118.
  
    0.737
Tola_1352
PFAM: protein of unknown function DUF140; KEGG: pap:PSPA7_1915 ABC transporter permease.
  
    0.733
Tola_1351
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psa:PST_0090 probable ATP-binding component of ABC transporter.
       0.732
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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