STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (325 aa)    
Predicted Functional Partners:
Tola_1359
TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: plu:plu1791 hypothetical protein.
 
  
 0.973
Tola_1363
TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein.
 
   
 0.900
Tola_1361
TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: eta:ETA_08430 hypothetical protein.
 
   
 0.892
Tola_1362
TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: plu:plu1795 hypothetical protein.
 
   
 0.890
Tola_1360
TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: eca:ECA3681 hypothetical protein.
 
     0.881
ihfA
Integration host factor, alpha subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.694
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.420
Tola_1316
PFAM: oxidoreductase domain protein; KEGG: bsu:BSU31170 hypothetical protein.
   
 
 0.417
Tola_1653
PFAM: oxidoreductase domain protein; KEGG: bha:BH2703 hypothetical protein.
   
 
 0.417
Tola_1888
PFAM: oxidoreductase domain protein; KEGG: bsu:BSU31170 hypothetical protein.
   
 
 0.417
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.