STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1570Hypothetical protein; KEGG: asa:ASA_2532 type IV pilus assembly protein TapV. (697 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.783
Tola_2625
PFAM: Pilus assembly protein PilO; KEGG: aha:AHA_3192 type IV pilus biogenesis protein PilO.
  
  
 0.674
Tola_2624
PFAM: Fimbrial assembly family protein; KEGG: aha:AHA_3193 type IV pilus biogenesis PilN.
  
  
 0.657
Tola_2949
KEGG: asa:ASA_0690 type IV pilus assembly protein.
  
    0.631
Tola_0886
KEGG: aha:AHA_1757 type IV pilus biogenesis/stability protein PilW; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein.
  
   
 0.617
Tola_1451
KEGG: asa:ASA_1832 hypothetical protein.
  
     0.607
Tola_0672
KEGG: asa:ASA_3413 hypothetical protein.
  
     0.606
Tola_2627
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; KEGG: aha:AHA_3190 type IV pilus secretin PilQ.
  
  
 0.596
Tola_1266
KEGG: shm:Shewmr7_3642 putative outer membrane adhesin like protein.
    
 
 0.595
Tola_2621
PFAM: Ig domain protein group 1 domain protein; KEGG: swp:swp_0520 Ig-like, group 1.
    
 
 0.595
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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