STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1592PFAM: SMC domain protein; KEGG: rde:RD1_0806 hypothetical protein. (680 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.959
Tola_1589
PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: rde:RD1_0805 helicase conserved C-terminal domain, putative.
 
  
 0.952
Tola_1591
KEGG: rde:RD1_0807 hypothetical protein.
 
     0.948
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
 0.945
Tola_1586
TIGRFAM: sulfurtransferase DndC; KEGG: vfm:VFMJ11_A0170 putative sulfurtransferase DndC.
 
   
 0.792
Tola_1590
PFAM: sigma-70 region 4 domain protein; KEGG: rde:RD1_0804 RNA polymerase sigma factor, putative.
       0.780
Tola_1593
Hypothetical protein.
       0.773
Tola_1585
TIGRFAM: DNA sulfur modification protein DndB; DGQHR domain protein; KEGG: vfm:VFMJ11_A0171 DNA sulfur modification protein DndB.
 
   
 0.733
Tola_1594
Hypothetical protein; KEGG: vfm:VFMJ11_A0163 dnd system-associated protein 3.
       0.641
Tola_1167
PFAM: GTP-binding protein HSR1-related; KEGG: ilo:IL0535 GTPase domain-containing protein.
  
     0.618
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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