STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1612KEGG: sbp:Sbal223_2131 phage integrase family protein. (1018 aa)    
Predicted Functional Partners:
Tola_1613
KEGG: shn:Shewana3_2019 hypothetical protein.
 
     0.937
Tola_1598
PFAM: integrase family protein; KEGG: shn:Shewana3_2022 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.776
Tola_1910
PFAM: integrase family protein; KEGG: prw:PsycPRwf_0726 phage integrase family protein; Belongs to the 'phage' integrase family.
 
     0.775
Tola_1597
KEGG: sbp:Sbal223_2135 hypothetical protein.
  
     0.773
Tola_1909
KEGG: spc:Sputcn32_2898 hypothetical protein.
  
     0.773
Tola_1596
Transcriptional regulator, XRE family; KEGG: shn:Shewana3_2024 hypothetical protein.
  
     0.770
Tola_1614
KEGG: shn:Shewana3_2018 hypothetical protein.
       0.737
Tola_1908
KEGG: sbl:Sbal_2316 Cro/CI family transcriptional regulator.
  
     0.662
Tola_1911
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: shn:Shewana3_2355 metal dependent phosphohydrolase.
  
     0.587
Tola_3040
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: she:Shewmr4_1722 methyltransferase type 12.
  
     0.453
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.