STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1625TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: abo:ABO_2511 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (360 aa)    
Predicted Functional Partners:
Tola_1626
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: cja:CJA_1240 branched-chain amino acid transport system / permease component domain protein.
 
 0.999
Tola_1623
KEGG: maq:Maqu_2997 ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.997
Tola_1624
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: maq:Maqu_2998 ABC transporter related.
 
 0.996
Tola_1627
TIGRFAM: urea ABC transporter, urea binding protein; KEGG: UreA or short-chain amide ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein.
 
 
 0.996
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.936
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.914
Tola_0140
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aha:AHA_0110 leucine/isoleucine/valine transporter ATP-binding subunit.
  
 0.877
Tola_0138
PFAM: inner-membrane translocator; KEGG: asa:ASA_4280 ABC-type branched-chain amino acid transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
 0.875
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.870
ureB
KEGG: pen:PSEEN2095 urease subunit beta; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; Belongs to the urease beta subunit family.
 
   
 0.784
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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