STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1637PFAM: UspA domain protein; KEGG: lpc:LPC_2097 hypothetical protein. (312 aa)    
Predicted Functional Partners:
Tola_2509
KEGG: lpp:lpp1693 hypothetical protein.
  
     0.464
Tola_0764
TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: asa:ASA_2799 ribosome-associated protein Y.
  
  
 0.453
Tola_0840
PFAM: protein of unknown function DUF339; KEGG: aha:AHA_0791 TPR repeat-containing protein.
  
     0.435
Tola_2482
KEGG: pla:Plav_3461 thymidine phosphorylase; TIGRFAM: thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like.
  
    0.434
Tola_2178
PFAM: Integral membrane protein TerC; KEGG: aha:AHA_1890 TerC protein.
 
     0.411
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.