STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1644PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: transcriptional regulator. (303 aa)    
Predicted Functional Partners:
Tola_2897
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mpt:Mpe_A3313 LysR family transcriptional regulator.
  
     0.691
Tola_2607
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eca:ECA4243 DNA-binding transcriptional regulator OxyR.
  
     0.678
Tola_1238
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2527 LysR family transcriptional regulator.
  
     0.662
Tola_2140
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aha:AHA_1656 LysR family transcriptional regulator.
  
     0.628
Tola_0236
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cti:RALTA_B1246 putative transcriptional regulator, LysR family.
  
     0.623
Tola_2009
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: spe:Spro_2527 LysR family transcriptional regulator.
  
     0.603
Tola_1643
PFAM: DoxX family protein; KEGG: hypothetical protein.
 
     0.580
Tola_0017
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: spe:Spro_2917 transcriptional regulator CysB-like protein.
  
     0.565
Tola_1645
KEGG: pde:Pden_0210 hypothetical protein.
       0.563
Tola_1846
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pap:PSPA7_6226 putative transcriptional regulator.
  
     0.515
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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