STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1815PFAM: nitroreductase; KEGG: mmw:Mmwyl1_0326 nitroreductase. (212 aa)    
Predicted Functional Partners:
Tola_2177
PFAM: nitroreductase; KEGG: aha:AHA_1801 nitroreductase A; Belongs to the flavin oxidoreductase frp family.
     
 0.925
Tola_1769
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bch:Bcen2424_6908 NADH:flavin oxidoreductase/NADH oxidase.
  
 
 0.909
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
  
    0.661
Tola_0593
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related.
  
  
 0.564
Tola_0883
PFAM: protein of unknown function DUF181; KEGG: aha:AHA_1943 hypothetical protein.
  
  
 0.564
Tola_2466
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: pla:Plav_3446 ABC transporter related.
  
  
 0.564
Tola_1813
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: vch:VCA0503 hypothetical protein.
       0.519
Tola_1814
KEGG: vco:VC0395_0742 transcriptional regulator, CopG family.
       0.519
Tola_3171
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; SMART: phospholipid/glycerol acyltransferase; KEGG: sde:Sde_3531 2-acyl-glycerophospho-ethanolamine acyltransferase.
   
 
 0.516
Tola_1302
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3718 hypothetical protein.
  
  
 0.461
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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