STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1935TIGRFAM: HipA N-terminal domain protein; KEGG: ecg:E2348C_3786 hypothetical protein. (103 aa)    
Predicted Functional Partners:
Tola_1936
PFAM: HipA domain protein; KEGG: hit:NTHI0786 hypothetical protein.
 
 
   0.969
Tola_1934
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hip:CGSHiEE_08850 hypothetical protein.
       0.782
Tola_1870
PFAM: HipA domain protein; KEGG: vei:Veis_0672 HipA domain protein.
 
 
   0.716
Tola_3115
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: asa:ASA_P4G110 HipA protein, DNA binding regulator.
 
 
   0.567
Tola_1937
Hypothetical protein.
       0.433
Tola_1932
PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: rso:RSc0625 transcription regulator protein.
  
    0.400
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.