STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1944PFAM: Xylose isomerase domain protein TIM barrel; KEGG: msu:MS0202 hypothetical protein. (327 aa)    
Predicted Functional Partners:
Tola_1943
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: msu:MS0201 RbsB protein.
     0.922
Tola_1043
TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: eca:ECA0440 rhamnulokinase.
    
 0.910
rhaA
KEGG: sew:SeSA_A4260 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
     
  0.900
Tola_1940
Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: msu:MS0198 DNA-binding transcriptional repressor RpiR.
     0.858
Tola_1836
KEGG: asu:Asuc_0174 putative lipoprotein.
 
     0.708
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      0.659
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      0.620
Tola_1942
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msu:MS0200 MglA protein.
       0.529
Tola_1837
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB0812 ABC transporter, periplasmic sugar binding protein.
 
     0.519
Tola_1941
PFAM: inner-membrane translocator; KEGG: msu:MS0199 AraH protein; Belongs to the binding-protein-dependent transport system permease family.
       0.489
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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