STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1952KEGG: aha:AHA_3217 thermostable hemolysin. (213 aa)    
Predicted Functional Partners:
Tola_1950
KEGG: asa:ASA_1094 hypothetical protein.
 
   
 0.957
Tola_1951
PFAM: AMP-dependent synthetase and ligase; KEGG: aha:AHA_3218 long-chain acyl-CoA synthetases.
 
   
 0.957
Tola_1948
KEGG: aha:AHA_3221 TPR repeat-containing protein.
 
   
 0.954
Tola_1949
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: asa:ASA_1093 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.954
Tola_1953
Diguanylate cyclase with PAS/PAC and GAF sensors; KEGG: pfl:PFL_1403 sensory box-containing diguanylate cyclase, putative; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein.
       0.458
Tola_1408
KEGG: pag:PLES_14921 alginate biosynthesis protein Alg8.
  
     0.454
Tola_1410
SMART: Sel1 domain protein repeat-containing protein; KEGG: pag:PLES_14901 alginate biosynthetic protein AlgK precursor.
  
     0.453
Tola_1412
KEGG: pmy:Pmen_1025 hypothetical protein.
  
     0.449
Tola_1411
KEGG: pfo:Pfl01_0955 carbohydrate binding and sugar hydrolysis.
  
     0.441
Tola_1413
PFAM: Alginate lyase; KEGG: pau:PA14_18470 poly(beta-D-mannuronate) lyase.
  
     0.424
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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