STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1956PFAM: protein of unknown function DUF81; KEGG: pha:PSHAa1469 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Tola_1954
Amidase, hydantoinase/carbamoylase family; KEGG: spe:Spro_0937 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
  
    0.780
Tola_1955
PFAM: aminotransferase class V; KEGG: ypi:YpsIP31758_3186 aminotransferase, class V.
       0.770
Tola_1957
PFAM: gamma-glutamyltranspeptidase; KEGG: pat:Patl_2054 gamma-glutamyltransferase.
       0.753
Tola_1958
PFAM: Amidase; KEGG: cja:CJA_0574 amidase; Belongs to the amidase family.
       0.753
Tola_1953
Diguanylate cyclase with PAS/PAC and GAF sensors; KEGG: pfl:PFL_1403 sensory box-containing diguanylate cyclase, putative; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; GAF domain protein; PAS domain containing protein.
       0.547
Tola_1960
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0549 transcriptional regulator, GntR family.
  
    0.455
Tola_1959
PFAM: helix-turn-helix protein RpiR; KEGG: ypb:YPTS_0906 RpiR family transcriptional regulator.
       0.450
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.