STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1965PFAM: Asp/Glu/hydantoin racemase; KEGG: rde:RD1_0861 hydantoin racemase. (230 aa)    
Predicted Functional Partners:
Tola_1964
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component.
 
    0.919
Tola_1966
KEGG: cak:Caul_3707 urate catabolism protein; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
 
     0.912
Tola_1963
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: binding-protein-dependent transport systems inner membrane component precursor.
 
     0.894
Tola_1962
KEGG: atc:AGR_L_3443 putative spermidine/putrescine transport system substrate-binding protein.
 
     0.882
Tola_1960
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0549 transcriptional regulator, GntR family.
 
     0.725
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.658
Tola_1968
TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: vco:VC0395_A2428 sec-independent translocase.
       0.658
tatC
Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.658
Tola_1959
PFAM: helix-turn-helix protein RpiR; KEGG: ypb:YPTS_0906 RpiR family transcriptional regulator.
 
     0.573
Tola_1961
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_3268 ABC transporter related; Belongs to the ABC transporter superfamily.
       0.546
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.