STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_1992PFAM: Carboxymuconolactone decarboxylase; KEGG: bac:BamMC406_3786 carboxymuconolactone decarboxylase. (265 aa)    
Predicted Functional Partners:
Tola_1331
PFAM: Carboxymuconolactone decarboxylase; Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: sus:Acid_2912 carboxymuconolactone decarboxylase.
   
 0.852
Tola_1330
PFAM: peptidase S15; KEGG: gur:Gura_4372 alpha/beta fold family hydrolase-like protein.
    0.773
Tola_0984
PFAM: branched-chain amino acid transport; KEGG: vpa:VPA1004 putative transmembrane protein.
  
     0.767
Tola_1323
KEGG: gur:Gura_4371 hypothetical protein.
 
  
 0.762
Tola_1930
Peptidase S15; KEGG: mmw:Mmwyl1_1946 peptidase S15.
    0.676
Tola_1929
KEGG: ank:AnaeK_3353 hypothetical protein.
 
     0.571
Tola_1991
PFAM: aldo/keto reductase; KEGG: bac:BamMC406_5053 aldo/keto reductase.
  
    0.539
Tola_1326
KEGG: ade:Adeh_3220 hypothetical protein.
 
     0.511
Tola_1990
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: xfa:XF1768 LysR family transcriptional regulator.
 
     0.474
Tola_1333
PFAM: aldo/keto reductase; KEGG: efe:EFER_2672 putative aldo-keto reductase.
 
    0.428
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.