STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2118PFAM: extracellular solute-binding protein family 5; KEGG: ret:RHE_PE00090 alpha-galactoside ABC transporter, substrate-binding protein. (683 aa)    
Predicted Functional Partners:
Tola_2119
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_441 oligopeptide ABC transporter, permease protein.
 
 0.992
Tola_2120
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_440 oligopeptide ABC transporter, permease protein.
 
 0.991
Tola_2511
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vco:VC0395_A2565 peptide ABC transporter, permease protein.
 
 0.967
Tola_2510
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asa:ASA_0989 dipeptide transport system permease protein DppC.
 
 0.966
Tola_2121
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SM_b21644 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.960
Tola_2513
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: asa:ASA_0986 dipeptide transport system ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
 
 
 0.946
Tola_2512
PFAM: extracellular solute-binding protein family 5; KEGG: vvu:VV1_1086 peptide ABC transporter, periplasmic peptide-binding protein.
  
  
 
0.905
Tola_1996
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aha:AHA_1497 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
  
  
 0.789
Tola_1709
PFAM: extracellular solute-binding protein family 1; KEGG: sugar uptake ABC transporter periplasmic solute-binding protein precursor.
  
  
 0.652
Tola_2124
PFAM: glycoside hydrolase family 4; KEGG: pla:Plav_1937 glycoside hydrolase family protein.
  
     0.633
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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