STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2167PFAM: protein of unknown function DUF1289; KEGG: vha:VIBHAR_02667 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Tola_1428
PFAM: ribonucleotide reductase; KEGG: stm:STM2278 ribonucleotide-diphosphate reductase subunit beta.
  
     0.691
Tola_2166
KEGG: slo:Shew_0489 hypothetical protein.
       0.686
Tola_1429
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
     0.644
Tola_0879
PFAM: protein of unknown function DUF412; KEGG: asa:ASA_3400 hypothetical protein.
  
     0.500
Tola_1560
KEGG: saz:Sama_1929 hypothetical protein.
  
     0.496
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
  
     0.483
Tola_1427
PFAM: ferredoxin; KEGG: ppr:PBPRA2461 iron-sulfur cluster-binding protein.
  
     0.469
Tola_2751
PFAM: protein of unknown function UPF0270; KEGG: eca:ECA4061 hypothetical protein; Belongs to the UPF0270 family.
  
     0.449
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.445
syd
Syd family protein; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.427
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.