STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2267PFAM: DNA polymerase beta domain protein region; KEGG: rbe:RBE_1175 nucleotidyltransferase. (100 aa)    
Predicted Functional Partners:
Tola_2266
TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: rfe:RF_0329 nucleotidyltransferase domain-containing protein.
 
     0.928
Tola_2058
TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: lpf:lpl2847 hypothetical protein.
 
     0.587
Tola_2268
PFAM: protein of unknown function DUF87; KEGG: vfm:VFMJ11_0910 hypothetical protein.
       0.533
Tola_2269
KEGG: vfm:VFMJ11_0911 hypothetical protein.
       0.533
Tola_2057
PFAM: DNA polymerase beta domain protein region; KEGG: lpf:lpl2848 hypothetical protein.
 
     0.494
Tola_2270
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; KEGG: shm:Shewmr7_1787 type III restriction enzyme, res subunit.
       0.478
Tola_2272
PFAM: restriction modification system DNA specificity domain; KEGG: shw:Sputw3181_1088 putative type I site-specific restriction-modification system, S subunit.
       0.472
Tola_2271
PFAM: filamentation induced by cAMP protein Fic; KEGG: ppd:Ppro_1856 fis family transcriptional regulator.
       0.455
Tola_2273
PFAM: N-6 DNA methylase; KEGG: shw:Sputw3181_1087 N-6 DNA methylase.
       0.439
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.