STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2345PFAM: amino acid permease-associated region; KEGG: aha:AHA_2694 aromatic amino acid transport protein AroP. (460 aa)    
Predicted Functional Partners:
Tola_0465
PFAM: SNARE associated Golgi protein; KEGG: aha:AHA_2446 DedA protein.
  
     0.459
Tola_2344
TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: kpe:KPK_1704 homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.459
Tola_0170
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: asa:ASA_0435 EmrB/QacA family drug resistance transporter.
  
   
 0.446
Tola_2339
PFAM: amino acid permease-associated region; KEGG: asa:ASA_3136 inner membrane protein YjeH.
 
  
 0.445
Tola_2341
TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: psa:PST_1357 NifM protein, putative a peptidyl-prolyl cis/trans isomerase.
       0.434
Tola_2342
PFAM: NifZ family protein; KEGG: azo:azo0547 nitrogen fixation protein.
       0.434
Tola_2343
PFAM: nitrogen fixation protein NifW; KEGG: eca:ECA2943 nitrogenase stabilizing/protective protein.
       0.434
Tola_0608
Branched-chain amino acid transport system II carrier protein; Component of the transport system for branched-chain amino acids.
 
  
 0.409
Tola_2346
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sde:Sde_3214 gluconolactonase.
       0.405
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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