STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2359KEGG: gsu:GSU1553 hypothetical protein. (124 aa)    
Predicted Functional Partners:
Tola_2360
KEGG: pap:PSPA7_0251 hypothetical protein.
 
 
 0.994
Tola_2361
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; histidine kinase HAMP region domain protein; SMART: histidine kinase HAMP region domain protein; protein phosphatase 2C domain protein; KEGG: gsu:GSU1551 signal domain-containing protein.
 
    0.961
Tola_2358
KEGG: glo:Glov_2111 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
   0.844
Tola_1843
KEGG: maq:Maqu_3846 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
   0.801
Tola_2079
KEGG: bph:Bphy_3794 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein.
 
   0.447
Tola_1314
Diguanylate cyclase with PAS/PAC and GAF sensors; KEGG: eca:ECA3270 hypothetical protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; GAF domain protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein.
 
   0.428
Tola_2839
KEGG: dvl:Dvul_2249 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
  
   0.406
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
       0.405
Tola_1998
KEGG: glo:Glov_1989 multi-sensor hybrid histidine kinase; TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; PAS fold-4 domain protein; Hemerythrin HHE cation binding domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein.
  
   0.403
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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