STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2401PFAM: Domain of unknown function DUF1845; KEGG: mpt:Mpe_A2339 hypothetical protein. (262 aa)    
Predicted Functional Partners:
Tola_2403
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bxe:Bxe_A1224 single-strand DNA-binding protein.
 
     0.909
Tola_2399
KEGG: bpt:Bpet1292 hypothetical protein.
 
     0.873
Tola_2400
KEGG: bpt:Bpet1293 hypothetical protein.
 
     0.873
Tola_2398
KEGG: bpt:Bpet1291 hypothetical protein.
 
     0.871
Tola_2396
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bpt:Bpet1290 hypothetical protein.
 
     0.870
Tola_2404
KEGG: xca:xccb100_2412 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein.
 
     0.849
Tola_2395
PFAM: Prophage CP4-57 regulatory; KEGG: eba:ebD61 transcriptional regulator.
 
     0.825
Tola_2402
KEGG: net:Neut_0118 hypothetical protein.
       0.799
Tola_2428
KEGG: bxe:Bxe_A1200 hypothetical protein.
 
     0.785
Tola_2430
KEGG: ajs:Ajs_1277 putative secreted protein.
 
     0.783
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.