STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2426PFAM: UvrD/REP helicase; KEGG: pla:Plav_3407 UvrD/REP helicase. (604 aa)    
Predicted Functional Partners:
Tola_2427
KEGG: xca:xccb100_2436 hypothetical protein YbjD.
 
   
 0.949
Tola_0349
TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: aha:AHA_0220 DNA helicase II.
  
  
 
0.917
Tola_1609
PFAM: UvrD/REP helicase; KEGG: vfm:VFMJ11_1067 UvrD/REP helicase, putative.
  
  
 
0.911
Tola_2428
KEGG: bxe:Bxe_A1200 hypothetical protein.
 
     0.760
Tola_2425
KEGG: pla:Plav_3406 hypothetical protein.
  
     0.739
Tola_2430
KEGG: ajs:Ajs_1277 putative secreted protein.
 
     0.732
Tola_2434
KEGG: pla:Plav_3415 hypothetical protein.
 
     0.728
Tola_2424
PFAM: helicase domain protein; SMART: DEAD-like helicase; KEGG: net:Neut_0104 helicase domain-containing protein.
 
 
 
 0.714
Tola_2432
KEGG: xcv:XCV2378 putative secreted protein.
 
     0.695
Tola_2433
KEGG: har:HEAR2005 hypothetical protein.
 
     0.678
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.