STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase; PFAM: amidinotransferase; KEGG: dsh:Dshi_0432 arginine deiminase. (409 aa)    
Predicted Functional Partners:
Tola_2458
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 
 0.998
Tola_2457
KEGG: dsh:Dshi_0434 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; Belongs to the carbamate kinase family.
 
  
 0.990
Tola_0096
TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: aha:AHA_0595 ornithine carbamoyltransferase.
 
 
 0.981
Tola_2460
PFAM: C4-dicarboxylate anaerobic carrier; KEGG: dsh:Dshi_0431 C4-dicarboxylate anaerobic carrier.
 
   
 0.943
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: asa:ASA_0582 argininosuccinate lyase.
     
 0.922
argG
KEGG: ent:Ent638_3608 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
     
 0.918
Tola_0093
TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: asa:ASA_0577 acetylornithine deacetylase.
  
 
 0.914
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
    
  0.820
Tola_0877
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
  
 0.651
Tola_0875
PFAM: domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase; KEGG: asa:ASA_0831 putative nucleoside-diphosphate sugar epimerase.
   
    0.501
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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