STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2476PFAM: UspA domain protein; KEGG: pla:Plav_3456 UspA domain-containing protein. (164 aa)    
Predicted Functional Partners:
Tola_2477
KEGG: pla:Plav_3457 hypothetical protein.
       0.773
Tola_2478
Hypothetical protein.
       0.773
Tola_2479
Ribose-phosphate pyrophosphokinase; KEGG: pla:Plav_3458 phosphoribosylpyrophosphate synthetase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase.
 
     0.636
Tola_2480
PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pla:Plav_3459 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase.
 
    0.596
Tola_2482
KEGG: pla:Plav_3461 thymidine phosphorylase; TIGRFAM: thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like.
  
    0.589
Tola_2475
PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: pla:Plav_3455 poly-beta-hydroxybutyrate polymerase domain-containing protein.
  
    0.551
Tola_2481
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pla:Plav_3460 beta-lactamase domain-containing protein.
  
    0.491
gltS
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
 
     0.425
Tola_2483
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pla:Plav_3462 LysR family transcriptional regulator.
 
     0.417
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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