STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase; KEGG: vvu:VV2_1070 glucuronate isomerase. (473 aa)    
Predicted Functional Partners:
Tola_2883
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: vvu:VV2_1069 mannitol-1-phosphate/altronate dehydrogenase.
 
 
 0.981
Tola_3026
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ypp:YPDSF_0367 altronate oxidoreductase.
 
 
 0.974
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.964
Tola_2896
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; KEGG: eum:ECUMN_1906 beta-D-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.944
uxaC-2
PFAM: Glucuronate isomerase; KEGG: kpe:KPK_0591 glucuronate isomerase.
  
  
 
0.901
Tola_1713
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: mmw:Mmwyl1_2712 alpha-N-arabinofuranosidase.
     
 0.820
Tola_2161
PFAM: class II aldolase/adducin family protein; KEGG: asa:ASA_2398 L-ribulose-5-phosphate 4-epimerase.
     
 0.814
Tola_3068
PFAM: class II aldolase/adducin family protein; KEGG: ppr:PBPRB0275 L-ribulose-5-phosphate 4-epimerase.
     
 0.814
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.618
Tola_3027
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: eca:ECA0647 altronate hydrolase.
 
  
 0.577
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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