STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_2900TIGRFAM: urea carboxylase-associated protein 1; KEGG: abo:ABO_1891 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Tola_2903
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cja:CJA_2719 ABC transporter, permease protein.
 
     0.942
Tola_2902
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cja:CJA_2720 ABC transporter, ATP-binding protein.
 
   
 0.938
Tola_2899
KEGG: cja:CJA_2723 UreA amidolyase homolog; TIGRFAM: urea carboxylase; urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; Allophanate hydrolase subunit 1; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1.
 
   
 0.937
Tola_2904
TIGRFAM: ABC transporter periplasmic binding protein, urea carboxylase region; KEGG: abo:ABO_1887 sulfonate ABC transporter periplasmic-binding protein.
 
     0.929
Tola_2898
TIGRFAM: allophanate hydrolase; PFAM: Amidase; KEGG: tgr:Tgr7_3090 allophanate hydrolase.
 
   
 0.902
Tola_2901
TIGRFAM: urea carboxylase-associated protein 2; KEGG: gbe:GbCGDNIH1_1747 hypothetical cytosolic protein.
 
    
0.828
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.