STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsTRibosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa)    
Predicted Functional Partners:
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: cja:CJA_3515 ribosomal protein L28-related protein; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.985
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.985
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
 
 0.984
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: amc:MADE_02335 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.984
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.984
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.984
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: asa:ASA_3464 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.984
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: pha:PSHAa0944 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.984
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: pmr:PMI3131 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
  
 
 0.984
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: ypb:YPTS_0495 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.983
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.