STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_3029PFAM: protein of unknown function DUF523; KEGG: aha:AHA_4208 hypothetical protein. (163 aa)    
Predicted Functional Partners:
ddl
D-alanine/D-alanine ligase; Cell wall formation.
 
    0.573
Tola_3027
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: eca:ECA0647 altronate hydrolase.
       0.503
Tola_3028
KEGG: vvu:VV2_1073 hypothetical protein.
       0.503
Tola_1113
PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: aha:AHA_1099 hypothetical protein.
  
     0.502
Tola_3026
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ypp:YPDSF_0367 altronate oxidoreductase.
       0.496
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.