STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_3074Hypothetical protein; KEGG: nmu:Nmul_B2808 peptidase C39, bacteriocin processing. (353 aa)    
Predicted Functional Partners:
Tola_3077
KEGG: rso:RS02969 putative rhs-related protein.
      0.758
Tola_3079
PFAM: peptidase C39 bacteriocin processing; KEGG: rso:RS00354 putative rhs-related transmembrane protein.
      0.693
Tola_3073
Hypothetical protein.
       0.522
Tola_3076
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: nmu:Nmul_B2808 peptidase C39, bacteriocin processing.
 
    
0.491
Tola_3075
Hypothetical protein.
       0.475
Tola_3165
KEGG: rpi:Rpic_1497 mucin-associated surface protein.
  
 
 0.468
Tola_2044
KEGG: eta:ETA_13210 UDP-galactose-lipid carrier transferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
   
    0.463
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.