STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_3107PFAM: Carboxylesterase type B; KEGG: bcj:BCAM2119 carboxylesterase. (532 aa)    
Predicted Functional Partners:
Tola_0222
PFAM: protein of unknown function DUF1593; KEGG: sde:Sde_0565 signal peptide and transmembrane prediction.
 
     0.476
Tola_1326
KEGG: ade:Adeh_3220 hypothetical protein.
 
  
 0.461
Tola_3106
PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: eca:ECA4388 PTS system, IIABC component.
       0.456
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.441
Tola_3105
PFAM: glycoside hydrolase family 1; KEGG: eca:ECA1451 glycosyl hydrolase; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.403
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.400
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.