STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_3115TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: asa:ASA_P4G110 HipA protein, DNA binding regulator. (432 aa)    
Predicted Functional Partners:
Tola_3114
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: asa:ASA_P4G111 transcriptional regulator.
 
 
 0.963
Tola_1936
PFAM: HipA domain protein; KEGG: hit:NTHI0786 hypothetical protein.
  
     0.583
Tola_1935
TIGRFAM: HipA N-terminal domain protein; KEGG: ecg:E2348C_3786 hypothetical protein.
 
 
   0.567
Tola_3113
PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: maq:Maqu_1910 type III restriction enzyme, res subunit.
       0.513
Tola_3035
PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN4650 hypothetical protein.
 
 
 0.495
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.