STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tola_3163Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: kpe:KPK_3434 putative sugar-binding domain protein. (320 aa)    
Predicted Functional Partners:
Tola_3162
TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; KEGG: kpe:KPK_3433 triosephosphate isomerase.
  
  
 0.666
Tola_3160
PFAM: Sorbitol phosphotransferase protein II domain protein; type III effector Hrp-dependent outers; KEGG: kpe:KPK_3431 sorbitol phosphotransferase enzyme II.
 
     0.494
Tola_1836
KEGG: asu:Asuc_0174 putative lipoprotein.
 
     0.467
Tola_3158
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: kpe:KPK_3428 ribose 5-phosphate isomerase B.
 
   
 0.412
Tola_3164
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vfm:VFMJ11_A0422 NADH oxidase.
       0.412
Tola_1837
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: yps:YPTB0812 ABC transporter, periplasmic sugar binding protein.
 
  
 0.411
Your Current Organism:
Tolumonas auensis
NCBI taxonomy Id: 595494
Other names: T. auensis DSM 9187, Tolumonas auensis DSM 9187, Tolumonas auensis TA 4, Tolumonas auensis str. DSM 9187, Tolumonas auensis strain DSM 9187
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.