STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000776DEAD box ATP-dependent RNA helicase. (1073 aa)    
Predicted Functional Partners:
CAOG_009678
Uncharacterized protein.
   
 0.993
CAOG_004211
Splicing factor 3b.
   
 0.993
CAOG_007044
Pre-mRNA-splicing factor.
    
 0.992
CAOG_001648
Splicing factor 3a.
   
 0.992
CAOG_006584
Splicing factor 3a subunit 2.
    
 0.991
CAOG_008064
Uncharacterized protein.
    
 0.991
CAOG_001197
Small nuclear ribonucleoprotein polypeptide A.
    
 0.989
CAOG_006136
Splicing factor 3B subunit 3.
    
 0.989
CAOG_003389
Sm domain-containing protein.
    
 0.988
CAOG_006903
Splicing factor 3B subunit 2.
   
 0.980
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.