STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_004614RBR-type E3 ubiquitin transferase. (823 aa)    
Predicted Functional Partners:
CAOG_002100
Ubiquitin-conjugating enzyme E2 l; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.823
CAOG_004868
RING-box protein 1.
    
 0.789
CAOG_003509
Ubiquitin/ribosomal protein S27a fusion protein.
    
 0.787
CAOG_006522
Ubiquitin-like domain-containing protein.
    
 0.778
CAOG_008398
Uncharacterized protein.
    
 0.769
CAOG_008578
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.696
CAOG_003184
Ubiquitin-carboxyl extension.
    
 0.672
CAOG_002291
Ubiquitin-conjugating enzyme E2N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.668
CAOG_008691
Ubiquitin-like domain-containing protein.
    
  0.659
CAOG_003260
Ubiquitin/60S ribosomal protein L40 fusion.
    
  0.659
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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