STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_004920VPS9 domain-containing protein. (554 aa)    
Predicted Functional Partners:
CAOG_000082
Uncharacterized protein.
    
 0.832
CAOG_004692
Uncharacterized protein.
    
 0.794
CAOG_003438
GTP-binding protein rab11.
    
 0.794
CAOG_001483
Uncharacterized protein.
    
 0.746
CAOG_005133
Uncharacterized protein.
    
 0.746
CAOG_007693
Rab31 protein.
    
 0.746
CAOG_008182
Ras-like protein Rab-21.
    
 0.711
CAOG_001016
Uncharacterized protein.
    
 0.696
CAOG_009723
Uncharacterized protein.
    
 0.696
CAOG_000129
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.630
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.