STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_005646Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (516 aa)    
Predicted Functional Partners:
CAOG_009596
Uncharacterized protein.
    
 0.900
CAOG_004123
Tryptophan synthase subunit beta.
    
 0.883
CAOG_004681
Cystathionine beta-lyase.
 
 0.840
CAOG_003984
Cystathionine gamma-synthase.
  
 0.840
CAOG_001065
Cystathionine gamma-lyase.
 
 0.838
CAOG_004469
Cystathionine beta-lyase.
 
 0.827
CAOG_010009
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.785
CAOG_010010
Prolyl-tRNA synthetase.
  
 0.785
CAOG_007301
Adenosylhomocysteinase.
  
 0.762
CAOG_005035
5-methyltetrahydrofolate-homocysteine methyltransferase reductase.
 
 
 0.700
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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