STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000307Short-chain dehydrogenase/reductase SDR. (269 aa)    
Predicted Functional Partners:
CAOG_004494
Uncharacterized protein.
  
 0.773
CAOG_001387
S-malonyltransferase.
 
 0.690
CAOG_002841
3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.667
CAOG_000071
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.664
CAOG_005797
Ferredoxin 1-like protein.
   
 0.632
CAOG_003243
Ferredoxin.
   
 0.632
CAOG_006040
Peroxisomal biogenesis factor 5.
    
 0.621
CAOG_002587
Peroxisomal 3-ketoacyl-CoA thiolase B; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.606
CAOG_003142
ATP-binding cassette subfamily E.
  
 0.604
CAOG_001528
Delta 9 fatty acid desaturase.
   
 0.601
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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