STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000792Ribosomal protein L41; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)    
Predicted Functional Partners:
CAOG_005569
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
 
 
 0.991
CAOG_001918
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 0.990
CAOG_006853
Ribosomal protein L31.
   
 0.989
CAOG_000181
Ribosomal protein L24.
   
 0.989
CAOG_001333
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.989
CAOG_006370
Ribosomal protein L32.
   
 0.989
CAOG_001666
60S ribosomal protein.
   
 0.988
CAOG_002488
Ribosomal protein L5.
   
 0.988
CAOG_007656
60S ribosomal protein L26.
   
 0.988
CAOG_000090
60S ribosomal protein l35a.
   
 0.987
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.