STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_002373J domain-containing protein. (298 aa)    
Predicted Functional Partners:
CAOG_006584
Splicing factor 3a subunit 2.
    
   0.636
CAOG_005226
Uncharacterized protein.
   
  0.606
CAOG_002633
Srrm2 protein.
    
  0.573
CAOG_009185
C2H2-type domain-containing protein.
   
 
  0.561
CAOG_000657
RNA binding domain-containing protein 39.
   
  0.551
CAOG_007448
Uncharacterized protein.
   
 
  0.522
CAOG_003144
Uncharacterized protein.
   
 
  0.502
CAOG_008856
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
  0.449
CAOG_006223
Nucleolar RNA helicase 2; Belongs to the DEAD box helicase family.
    
  0.449
CAOG_005283
DEAD box RNA helicase; Belongs to the DEAD box helicase family.
    
  0.449
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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