CAOG_002951 protein (Capsaspora owczarzaki) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAOG_002951

Uncharacterized protein. (1054 aa)

Predicted Functional Partners:

CAOG_001212

0.999

CAOG_004486

0.869

CAOG_005951

0.869

CAOG_007528

0.866

CAOG_006812

0.861

CAOG_000128

0.855

CAOG_007247

0.844

CAOG_008398

0.836

CAOG_000487

0.834

CAOG_005267

0.832

Your Current Organism:

Capsaspora owczarzaki

NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAOG_000128	CAOG_002951	A0A0D2X056	A0A0D2VNI8	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.855
CAOG_000128	CAOG_004486	A0A0D2X056	A0A0D2UF59	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	UBX domain-containing protein 2B.	0.733
CAOG_000128	CAOG_005951	A0A0D2X056	A0A0D2WUC6	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Nuclear protein localization protein.	0.962
CAOG_000128	CAOG_006812	A0A0D2X056	A0A0D2VXT4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.952
CAOG_000128	CAOG_007528	A0A0D2X056	A0A0D2VZ41	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Ubiquitin fusion degradaton protein.	0.964
CAOG_000128	CAOG_008398	A0A0D2X056	A0A0D2U0D4	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	Uncharacterized protein.	0.597
CAOG_000487	CAOG_001212	A0A0D2X0E4	A0A0D2VIH6	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	UBX domain-containing protein.	0.999
CAOG_000487	CAOG_002951	A0A0D2X0E4	A0A0D2VNI8	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Uncharacterized protein.	0.834
CAOG_000487	CAOG_005951	A0A0D2X0E4	A0A0D2WUC6	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Nuclear protein localization protein.	0.544
CAOG_000487	CAOG_007528	A0A0D2X0E4	A0A0D2VZ41	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Ubiquitin fusion degradaton protein.	0.619
CAOG_000487	CAOG_008398	A0A0D2X0E4	A0A0D2U0D4	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Uncharacterized protein.	0.990
CAOG_001212	CAOG_000487	A0A0D2VIH6	A0A0D2X0E4	UBX domain-containing protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
CAOG_001212	CAOG_002951	A0A0D2VIH6	A0A0D2VNI8	UBX domain-containing protein.	Uncharacterized protein.	0.999
CAOG_001212	CAOG_004486	A0A0D2VIH6	A0A0D2UF59	UBX domain-containing protein.	UBX domain-containing protein 2B.	0.994
CAOG_001212	CAOG_005951	A0A0D2VIH6	A0A0D2WUC6	UBX domain-containing protein.	Nuclear protein localization protein.	0.999
CAOG_001212	CAOG_007528	A0A0D2VIH6	A0A0D2VZ41	UBX domain-containing protein.	Ubiquitin fusion degradaton protein.	0.999
CAOG_001212	CAOG_008398	A0A0D2VIH6	A0A0D2U0D4	UBX domain-containing protein.	Uncharacterized protein.	0.981
CAOG_002951	CAOG_000128	A0A0D2VNI8	A0A0D2X056	Uncharacterized protein.	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.	0.855
CAOG_002951	CAOG_000487	A0A0D2VNI8	A0A0D2X0E4	Uncharacterized protein.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.834
CAOG_002951	CAOG_001212	A0A0D2VNI8	A0A0D2VIH6	Uncharacterized protein.	UBX domain-containing protein.	0.999