STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_009647Uncharacterized protein. (1217 aa)    
Predicted Functional Partners:
CAOG_008210
UV excision repair protein Rad23.
   
 0.998
CAOG_002212
BSD domain-containing protein.
    
 0.973
CAOG_009797
Uncharacterized protein.
    
 0.971
CAOG_008527
Helicase ATP-binding domain-containing protein.
    
 0.927
CAOG_005182
Notch1-induced protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.911
CAOG_001357
General transcription factor IIH subunit.
    
 0.900
CAOG_000067
Ubiquitin.
     
 0.890
CAOG_000471
WD repeat-containing protein 76.
   
 0.884
CAOG_006159
Transcription factor IIH subunit.
   
 0.881
CAOG_008298
DNA repair helicase RAD25.
   
 0.881
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.