STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_0078782-oxoglutarate and iron-dependent oxygenase. (597 aa)    
Predicted Functional Partners:
CAOG_001802
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.695
CAOG_005901
BHLH domain-containing protein.
   
 
 0.598
CAOG_008069
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.581
CAOG_002674
ABC transporter.
   
   0.566
CAOG_001314
Coproporphyrinogen oxidase.
   
  
 0.563
CAOG_007556
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.562
CAOG_008140
Elongation factor Tu.
   
 
 0.541
CAOG_005863
Tsr1 protein.
   
    0.497
CAOG_003433
BHLH domain-containing protein.
   
 
 0.487
CAOG_005117
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.470
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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