STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_000818Uncharacterized protein. (388 aa)    
Predicted Functional Partners:
CAOG_003802
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.495
CAOG_007921
RRM domain-containing protein.
    
   0.491
CAOG_008938
WD_REPEATS_REGION domain-containing protein.
   
    0.483
CAOG_008056
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
    0.457
CAOG_004245
Brix domain-containing protein 1.
   
    0.442
CAOG_005638
Sas10 domain-containing protein.
   
    0.442
CAOG_006069
Nucleolar protein 10.
   
    0.430
CAOG_005142
CBF domain-containing protein.
   
    0.412
CAOG_008061
WD repeat domain-containing protein.
   
    0.408
CAOG_005508
Uncharacterized protein.
   
    0.408
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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