STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_002038DEAD box polypeptide 1. (728 aa)    
Predicted Functional Partners:
CAOG_002462
Homeobox prox 1.
   
 0.969
CAOG_002998
Uncharacterized protein.
   
 0.909
CAOG_006407
Release factor H-coupled RctB family protein.
   
 0.909
CAOG_009890
Uncharacterized protein.
    
 0.902
CAOG_009761
Uncharacterized protein.
   
 0.711
CAOG_007877
Pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.698
CAOG_004211
Splicing factor 3b.
   
 0.697
CAOG_007121
Archease.
     
 0.691
CAOG_006373
Pre-mRNA splicing factor.
   
 0.684
CAOG_006972
Uncharacterized protein.
   
 0.681
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.