STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_003903Histidine triad protein. (131 aa)    
Predicted Functional Partners:
CAOG_006656
Tbpl2 protein.
    
 0.839
CAOG_001426
Uncharacterized protein.
    
 0.794
CAOG_001914
CMGC/CDK/CDK7 protein kinase; Belongs to the protein kinase superfamily.
 
  
 0.703
CAOG_003578
Uncharacterized protein.
    
 0.687
CAOG_004743
MAT1 domain-containing protein.
    
 0.680
CAOG_002676
SPRT-like metalloprotease.
    
 0.668
CAOG_005200
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
   
    0.648
CAOG_006332
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 
  0.592
CAOG_000654
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.589
CAOG_004347
Uncharacterized protein.
    
  0.582
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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