STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_004440Pre-mRNA-splicing factor 38A. (329 aa)    
Predicted Functional Partners:
CAOG_000168
MFAP1 domain-containing protein.
   
 0.994
CAOG_001983
Uncharacterized protein.
   
 0.986
CAOG_006782
U1-type domain-containing protein.
   
 0.981
CAOG_006700
Pleiotropic regulator 1.
 
 
  0.942
CAOG_004320
Ubiquitin-like domain-containing protein.
    
 0.938
CAOG_009155
RED_N domain-containing protein.
   
 0.899
CAOG_002164
Uncharacterized protein.
   
 0.887
CAOG_002659
PWI domain-containing protein.
   
 0.873
CAOG_006373
Pre-mRNA splicing factor.
   
 0.872
CAOG_007105
Pre-mRNA splicing factor prp8.
    
 
 0.871
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.