STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_004548GATA-type domain-containing protein. (1414 aa)    
Predicted Functional Partners:
CAOG_004282
Tbl1xr1 protein.
   
 0.827
CAOG_002157
TBP-associated factor 5.
   
 0.770
CAOG_002754
Uncharacterized protein.
    
 0.766
CAOG_003397
TFIID_20kDa domain-containing protein.
    
 0.750
CAOG_005985
Uncharacterized protein.
    
 0.745
CAOG_004178
Uncharacterized protein.
    
 0.743
CAOG_004720
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.741
CAOG_000573
Uncharacterized protein.
    
 0.735
CAOG_000952
Uncharacterized protein.
    
 0.734
CAOG_004385
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.732
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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