STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_005668Nipsnap family protein. (340 aa)    
Predicted Functional Partners:
CAOG_004664
40S ribosomal protein S27.
 
      0.781
CAOG_001013
Uncharacterized protein.
   
   0.677
CAOG_004858
SMC hinge domain-containing protein.
   
    0.660
CAOG_001758
Anti-silencing protein 1.
   
    0.659
CAOG_000662
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.659
CAOG_005374
U3 small nucleolar RNA-associated protein 15, variant 1.
   
    0.657
CAOG_007403
WD_REPEATS_REGION domain-containing protein.
   
    0.657
CAOG_003181
Proteasome 26S subunit; Belongs to the proteasome subunit S1 family.
   
    0.657
CAOG_006358
Nucleolar protein 5A.
   
    0.654
CAOG_005000
Roc domain-containing protein.
    
  0.601
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.