STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_005823Vacuolar assembling/sorting protein VPS16; Belongs to the VPS16 family. (835 aa)    
Predicted Functional Partners:
CAOG_002843
Vesicle fusion protein.
  
 0.997
CAOG_000232
Vacuolar protein sorting protein 18.
   
 0.996
CAOG_000375
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.996
CAOG_001266
VPS11_C domain-containing protein.
    
 0.996
CAOG_004604
Vacuolar protein sorting 41 isoform 1; Belongs to the VPS41 family.
    
 0.996
CAOG_000151
TGF beta receptor associated protein.
   
 0.993
CAOG_003566
Vps8-like protein.
    
 
 0.985
CAOG_001381
Rab9a protein.
    
 
 0.965
CAOG_008123
Uncharacterized protein.
    
 
 0.964
CAOG_003600
t-SNARE coiled-coil homology domain-containing protein.
    
 
 0.958
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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