STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAOG_005520Uncharacterized protein. (1390 aa)    
Predicted Functional Partners:
CAOG_003509
Ubiquitin/ribosomal protein S27a fusion protein.
    
  0.787
CAOG_008398
Uncharacterized protein.
    
  0.769
CAOG_003184
Ubiquitin-carboxyl extension.
    
  0.762
CAOG_008691
Ubiquitin-like domain-containing protein.
    
  0.668
CAOG_003260
Ubiquitin/60S ribosomal protein L40 fusion.
    
  0.668
CAOG_005933
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.668
CAOG_000620
Polyubiquitin 5.
    
  0.643
CAOG_001293
Ubiquitin family protein.
    
  0.643
CAOG_004037
Ubiquitin-like domain-containing protein.
    
  0.643
CAOG_002738
Ubiquitin family protein.
   
  0.603
Your Current Organism:
Capsaspora owczarzaki
NCBI taxonomy Id: 595528
Other names: C. owczarzaki ATCC 30864, Capsaspora owczarzaki ATCC 30864
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.